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PSiTE: a Phylogeny guided Simulator for Tumor Evolution
Journal article   Peer reviewed

PSiTE: a Phylogeny guided Simulator for Tumor Evolution

Hechuan Yang, Bingxin Lu, Lan Huong Lai, Abner Herbert Lim, Jacob Josiah Santiago Alvarez and Weiwei Zhai
BIOINFORMATICS, Vol.35(17), pp.3148-3150
01/09/2019
PMID: 30649258

Abstract

Biochemical Research Methods Biochemistry & Molecular Biology Biotechnology & Applied Microbiology Computer Science, Interdisciplinary Applications Life Sciences & Biomedicine Mathematical & Computational Biology Science & Technology Statistics & Probability Computer Science Mathematics Physical Sciences Technology
The Summary: Simulating realistic clonal dynamics of tumors is an important topic in cancer genomics. Here, we present Phylogeny guided Simulator for Tumor Evolution, a tool that can simulate different types of tumor samples including single sector, multi-sector bulk tumor as well as single-cell tumor data under a wide range of evolutionary trajectories. Phylogeny guided Simulator for Tumor Evolution provides an efficient tool for understanding clonal evolution of cancer.

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